SMTL ID : 7bc9.1

Notum Fragment 690

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.4: 3 residues within 4Å: Chain A: R.295, K.326, V.360 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:R.295, A:R.295, A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.5: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.6: 7 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97, A.98 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 Salt bridges: A:R.42 SO4.7: 3 residues within 4Å: Chain A: P.356, V.357, H.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.357, A:H.358 SO4.8: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.19, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.255

1 x UR4: 2-methoxy-N-(4-phenyl-1,3-thiazol-2-yl)acetamide(Non-covalent)

UR4.9: 11 residues within 4Å: Chain A: W.51, Y.52, S.155, A.156, T.159, F.191, I.214, F.242, A.265, T.268, V.269 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.265, A:T.268, A:V.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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