SMTL ID : 7bcf.1

Notum Fragment 722

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Salt bridges: A:R.68 SO4.3: 2 residues within 4Å: Chain A: K.326, V.360 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.358 Water bridges: A:K.326, A:V.360 Salt bridges: A:K.326 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.5: 5 residues within 4Å: Chain A: P.93, Y.94, W.95, W.96, N.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.96, A:N.97 SO4.6: 1 residues within 4Å: Chain A: R.68 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.68

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.19, A:E.133, A:R.136

1 x T9W: 2-[4-(2,5-Dioxopyrrolidin-1-yl)phenoxy]acetate(Non-covalent)

T9W.7: 13 residues within 4Å: Chain A: G.49, G.50, W.51, Y.52, S.155, A.156, T.159, F.191, P.210, I.214, F.242, F.243, H.312 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.51, A:Y.52, A:Y.52, A:A.156, A:F.191, A:F.242, A:F.243 Hydrogen bonds: A:G.50, A:W.51, A:W.51, A:S.155, A:A.156 Salt bridges: A:H.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

Related Entries With Identical Sequence