SMTL ID : 7bci.1

Notum Fragment 784

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 3 residues within 4Å: Chain A: R.295, K.326, V.360 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:K.326, A:K.326 Salt bridges: A:R.295, A:K.326 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.122 Salt bridges: A:R.56 SO4.5: 5 residues within 4Å: Chain A: Y.94, W.95, W.96, N.97, A.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 SO4.6: 3 residues within 4Å: Chain A: Q.280, E.281, R.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.281, A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.19, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

2 x GVV: ~{N}-(4-methyl-2-oxidanyl-phenyl)propanamide(Non-covalent)

GVV.7: 10 residues within 4Å: Chain A: W.51, Y.52, V.110, S.155, A.156, T.159, F.191, I.214, F.242, F.243 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:Y.52, A:A.156, A:T.159, A:F.191, A:I.214, A:F.242, A:F.243 Hydrogen bonds: A:S.155 GVV.8: 9 residues within 4Å: Chain A: L.192, D.193, N.194, P.210, T.211, F.243, Q.266, V.269, D.270 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.243, A:V.269 Hydrogen bonds: A:N.194, A:P.210, A:T.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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