SMTL ID : 7bd4.1

Notum Fragment 828

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.4: 6 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 Salt bridges: A:R.42 SO4.5: 7 residues within 4Å: Chain A: G.50, W.51, S.155, A.156, F.191, H.312 Ligands: JHJ.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.50, A:W.51, A:S.155, A:S.155, A:A.156 Salt bridges: A:H.312

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, S.21, V.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x JHJ: N-(4-methoxyphenyl)-N'-pyridin-4-ylurea(Non-covalent)

JHJ.6: 7 residues within 4Å: Chain A: W.51, F.191, F.242, F.243, T.268, V.269 Ligands: SO4.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.269 pi-Stacking: A:W.51, A:W.51, A:Y.52, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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