SMTL ID : 7bd8.1

Notum Fragment 872

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.6: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.7: 2 residues within 4Å: Chain A: R.339, H.342 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.339, A:H.342 SO4.8: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.19, A:R.136, A:R.136

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.42, A:R.42, A:N.97, A:A.98 pi-Cation interactions: A:W.96 DMS.4: 3 residues within 4Å: Chain A: S.40, R.41, R.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.41 DMS.5: 7 residues within 4Å: Chain A: Y.33, E.48, W.75, P.76, R.79, F.102, P.104 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:E.48 pi-Cation interactions: A:W.75

1 x QL5: (2,5-dimethylphenyl) pyridine-4-carboxylate(Non-covalent)

QL5.9: 10 residues within 4Å: Chain A: W.51, Y.52, A.156, F.191, L.192, T.211, I.214, F.243, A.265, V.269 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:W.51, A:Y.52, A:A.156, A:F.191, A:F.191, A:F.191, A:I.214, A:A.265 Hydrogen bonds: A:Y.52 pi-Stacking: A:F.243

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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