7bdh.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 7bdh.1

Notum Fragment 955

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1:	4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68
SO4.4:	5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56
SO4.5:	4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.280, A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2:

2 residues within 4Å:

Chain A: N.19, V.22

1 PLIP interactions:

1 interactions with chain A

Hydrogen bonds: A:N.19

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

6 residues within 4Å:

Chain A: R.42, Y.94, W.95, W.96, N.97, A.98

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:R.42, A:R.42, A:N.97, A:A.98
pi-Cation interactions: A:W.96

2 x TEZ: N-(2,1,3-Benzothiadiazol-5-yl)acetamide(Non-covalent)

TEZ.6:	8 residues within 4Å: Chain A: W.51, Y.52, T.159, F.191, F.242, F.243, V.269 Ligands: TEZ.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.51 pi-Stacking: A:Y.52, A:F.191
TEZ.7:	11 residues within 4Å: Chain A: F.191, L.192, D.193, N.194, P.210, T.211, F.243, Q.266, V.269, D.270 Ligands: TEZ.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.269 Hydrogen bonds: A:N.194, A:T.211

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Zhao, Y. et al., Structural Analysis and Development of Notum Fragment Screening Hits. Acs Chem Neurosci (2022)

Release Date

2022-01-12

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Palmitoleoyl-protein carboxylesterase NOTUM

Related Entries With Identical Sequence

4uyu.1 | 4uyu.2 | 4uyw.1 | 4uyw.2 | 4uz1.1 | 4uz5.1 | 4uz6.1 | 4uz6.2 | 4uz7.1 | 4uz7.2 | 4uz9.1 | 6r8p.1 | 6r8q.1 | 6r8r.1 | 6t2h.1 | 6t2k.1 | 6tr5.1 | 6tr6.1 | 6tr7.1 | 6tuz.1 | 6tv4.1 | 6ysk.1 | 6yuw.1 | 6yuy.1 | 6yv0.1 | 6yv2.1 | 6yv4.1 | 6yxi.1 | 6zuv.1 | 6zvl.1 more...less...

7arg.1 | 7b2v.1 | 7b2y.1 | 7b2z.1 | 7b37.1 | 7b3g.1 | 7b3h.1 | 7b3i.1 | 7b3p.1 | 7b3x.1 | 7b45.1 | 7b4x.1 | 7b50.1 | 7b7w.1 | 7b7x.1 | 7b7y.1 | 7b84.1 | 7b86.1 | 7b87.1 | 7b89.1 | 7b8a.1 | 7b8c.1 | 7b8d.1 | 7b8f.1 | 7b8g.1 | 7b8j.1 | 7b8k.1 | 7b8l.1 | 7b8m.1 | 7b8n.1 | 7b8o.1 | 7b8u.1 | 7b8x.1 | 7b8y.1 | 7b8z.1 | 7b98.1 | 7b99.1 | 7b9d.1 | 7b9i.1 | 7b9n.1 | 7b9u.1 | 7ba1.1 | 7bac.1 | 7bap.1 | 7bc8.1 | 7bc9.1 | 7bcc.1 | 7bcd.1 | 7bcf.1 | 7bch.1 | 7bci.1 | 7bck.1 | 7bcl.1 | 7bd2.1 | 7bd3.1 | 7bd4.1 | 7bd5.1 | 7bd6.1 | 7bd8.1 | 7bd9.1 | 7bda.1 | 7bdb.1 | 7bdc.1 | 7bdd.1 | 7bdf.1 | 7bdg.1 | 7bli.1 | 7bls.1 | 7blt.1 | 7blu.1 | 7blw.1 | 7bm1.1 | 7bm3.1 | 7bm7.1 | 7bmb.1 | 7bmd.1 | 7bn5.1 | 7bn8.1 | 7bnb.1 | 7bnc.1 | 7bnd.1 | 7bne.1 | 7bnf.1 | 7bnj.1 | 7bnl.1 | 7pjr.1 | 7pk3.1 | 7pkv.1 | 7qvz.1 | 8bsp.1 | 8bsq.1 | 8bsr.1 | 8bsz.1 | 8bt0.1 | 8bt2.1 | 8bt5.1 | 8bt7.1 | 8bt8.1 | 8bta.1 | 8btc.1 | 8bte.1 | 8bth.1 | 8bti.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top