SMTL ID : 7blt.1

Notum_Maybridge_4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:R.68, A:D.74, A:D.74 Salt bridges: A:R.68 SO4.4: 3 residues within 4Å: Chain A: R.295, K.326, V.360 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:R.295, A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.5: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:R.56, A:K.120, A:Y.123 Salt bridges: A:R.56 SO4.6: 7 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97, A.98 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97, A:A.98 Salt bridges: A:R.42 SO4.7: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.281, A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.19, V.22, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19 Water bridges: A:E.133

1 x U2T: 3-(4-~{tert}-butylphenyl)-1,2,4-oxadiazole-5-carbohydrazide(Non-covalent)

U2T.3: 11 residues within 4Å: Chain A: G.49, G.50, W.51, S.155, A.156, F.191, I.214, F.242, A.265, H.312, E.313 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.51, A:F.191, A:F.191, A:F.191, A:I.214, A:I.214, A:F.242 Hydrogen bonds: A:G.50, A:W.51, A:S.155, A:A.156, A:H.312, A:E.313 pi-Stacking: A:W.51, A:W.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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