SMTL ID : 7bm7.1

Notum fragment 5e

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.6: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:Y.123 Salt bridges: A:R.56 SO4.7: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.281, A:E.281 Salt bridges: A:R.284 SO4.8: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.197 Salt bridges: A:R.198

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.19, V.22, L.129, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:R.136

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 5 residues within 4Å: Chain A: Y.94, W.95, W.96, N.97, A.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.97 pi-Cation interactions: A:W.96 DMS.4: 7 residues within 4Å: Chain A: Y.33, E.48, W.75, P.76, R.79, F.102, P.104 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:E.48 pi-Cation interactions: A:W.75

1 x U3Q: 1-Naphthalenepentanoic acid(Non-covalent)

U3Q.5: 15 residues within 4Å: Chain A: G.49, G.50, W.51, Y.52, S.155, A.156, T.159, F.191, P.210, I.214, F.242, F.243, A.265, V.269, H.312 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.51, A:W.51, A:Y.52, A:F.191, A:F.191, A:F.191, A:F.191, A:P.210, A:I.214, A:F.243, A:A.265, A:V.269 Hydrogen bonds: A:G.50, A:W.51, A:W.51, A:S.155, A:A.156 Salt bridges: A:H.312 pi-Stacking: A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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