SMTL ID : 7bn5.1

Notum fragment_1 (2-(isoquinolin-1-ylsulfanyl)acetic acid)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Salt bridges: A:R.68 SO4.2: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Salt bridges: A:R.56 SO4.3: 1 residues within 4Å: Chain A: R.339 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.339

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: Y.94, H.335, D.338, H.342 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: N.19, V.22, R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

1 x U4K: 2-isoquinolin-1-ylsulfanylethanoic acid(Non-covalent)

U4K.6: 11 residues within 4Å: Chain A: G.50, W.51, Y.52, V.110, S.155, A.156, F.191, I.214, A.265, V.269, H.312 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.52, A:V.110, A:F.191, A:F.191, A:I.214 Hydrogen bonds: A:G.50, A:W.51, A:W.51, A:S.155, A:A.156 Salt bridges: A:H.312 pi-Stacking: A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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