SMTL ID : 7bn8.1

Notum fragment_3 (4H,5H-naphtho[1,2-b]thiophene-2-carboxylic acid)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.19, V.22, L.129, R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.167, V.225, E.227, R.230 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.227 Salt bridges: A:R.167, A:R.230 SO4.3: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Salt bridges: A:R.68 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122, A:Y.220 Water bridges: A:R.56, A:Y.123 Salt bridges: A:R.56 SO4.5: 2 residues within 4Å: Chain A: R.228, R.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.231 Salt bridges: A:R.228

1 x U4T: 4H,5H-naphtho[1,2-b]thiophene-2-carboxylic acid(Non-covalent)

U4T.6: 12 residues within 4Å: Chain A: G.50, W.51, S.155, A.156, T.159, F.191, P.210, F.242, F.243, A.265, V.269, H.312 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.51, A:T.159, A:F.191, A:F.191, A:P.210, A:F.243, A:F.243, A:A.265, A:V.269 Hydrogen bonds: A:G.50, A:W.51, A:A.156 Water bridges: A:S.155, A:S.155 Salt bridges: A:H.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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