SMTL ID : 7bnc.1

Notum fragment_126 (2-(1,2-dihydroacenaphthylen-5-ylsulfanyl)acetic acid)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.167, V.225, E.227, R.230 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.167, A:R.230 SO4.2: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:Y.123 Salt bridges: A:R.56 SO4.4: 6 residues within 4Å: Chain A: G.39, S.40, R.41, R.42, N.97, K.147 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.41, A:R.41, A:N.97 Salt bridges: A:R.42, A:K.147 SO4.5: 1 residues within 4Å: Chain A: R.228 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.231 Salt bridges: A:R.228 SO4.6: 6 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97, A.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.96, A:N.97, A:A.98 SO4.7: 2 residues within 4Å: Chain A: Y.197, R.198 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.197 Salt bridges: A:R.198

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: R.42, Y.94, H.335, D.338, H.342 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 5 residues within 4Å: Chain A: N.19, V.22, L.129, Q.132, R.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.19, A:Q.132

1 x U5B: 2-(1,2-dihydroacenaphthylen-5-ylsulfanyl)ethanoic acid(Non-covalent)

U5B.10: 14 residues within 4Å: Chain A: G.49, G.50, W.51, Y.52, V.110, S.155, A.156, T.159, F.191, P.210, I.214, F.243, V.269, H.312 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.51, A:V.110, A:T.159, A:F.191, A:P.210, A:I.214, A:F.243, A:V.269 Hydrogen bonds: A:G.50, A:W.51, A:W.51, A:S.155, A:A.156 Salt bridges: A:H.312 pi-Stacking: A:Y.52, A:Y.52, A:F.191, A:F.191, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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