SMTL ID : 7bnd.1

Notum_Fragment41 (N-methyl-4,5-dihydronaphtho,2-bthiophene-2-carboxamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.19, V.22, Q.132, R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.132

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.167, E.170, V.225, E.227 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.167 SO4.3: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.65, A:R.67, A:R.68 Salt bridges: A:R.68 SO4.4: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:Y.123 Salt bridges: A:R.56 SO4.5: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141 SO4.6: 4 residues within 4Å: Chain A: Y.197, R.198, Q.280, L.283 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.197 Salt bridges: A:R.198 SO4.9: 3 residues within 4Å: Chain A: P.356, V.357, H.358 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.357, A:H.358

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain A: R.13, L.34, E.36 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.13, A:E.36, A:E.36

1 x U5E: N-methyl-4,5-dihydrobenzo[g]benzothiophene-2-carboxamide(Non-covalent)

U5E.8: 12 residues within 4Å: Chain A: G.50, W.51, Y.52, S.155, A.156, T.159, F.191, I.214, F.242, A.265, V.269, H.312 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.51, A:F.191, A:F.191, A:F.191, A:I.214, A:A.265, A:V.269 Hydrogen bonds: A:G.50, A:W.51, A:W.51, A:S.155, A:A.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum inhibitors. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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