SMTL ID : 7bnj.1

Notum Riluzole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

13 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.167, E.170, V.225, E.227, R.230 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.170, A:E.227, A:E.227 Water bridges: A:R.167 Salt bridges: A:R.167, A:R.230 SO4.2: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Water bridges: A:D.74 Salt bridges: A:R.68 SO4.3: 5 residues within 4Å: Chain A: R.56, K.120, N.121, E.122, Y.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.122 Water bridges: A:R.56, A:Y.123, A:Y.123 Salt bridges: A:R.56 SO4.4: 3 residues within 4Å: Chain A: R.295, K.326, V.360 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.360 Water bridges: A:R.295, A:R.295, A:K.326, A:V.360 Salt bridges: A:R.295, A:K.326 SO4.5: 3 residues within 4Å: Chain A: P.356, V.357, H.358 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.357, A:H.358 Water bridges: A:C.355 SO4.6: 7 residues within 4Å: Chain A: R.42, P.93, Y.94, W.95, W.96, N.97, A.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.93, A:W.96, A:N.97 SO4.7: 3 residues within 4Å: Chain A: R.317, S.318, H.319 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.318, A:H.319 Salt bridges: A:R.317, A:H.319 SO4.8: 3 residues within 4Å: Chain A: R.13, H.15, R.141 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.13, A:H.15, A:R.141 SO4.13: 1 residues within 4Å: Chain A: R.68 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.68 SO4.14: 4 residues within 4Å: Chain A: R.13, L.34, K.35, E.36 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.36, A:E.36, A:E.36 Water bridges: A:R.13, A:R.13 Salt bridges: A:R.13 SO4.15: 6 residues within 4Å: Chain A: D.166, P.226, E.227, R.228, L.251, R.252 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.166, A:D.166, A:E.227, A:R.228 Water bridges: A:C.229, A:T.250 Salt bridges: A:R.228 SO4.16: 6 residues within 4Å: Chain A: G.50, W.51, S.155, H.312, E.313 Ligands: 657.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.51, A:S.155 Water bridges: A:G.50, A:A.156 Salt bridges: A:H.312 SO4.17: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.9: 3 residues within 4Å: Chain A: N.19, V.22, R.136 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.10: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.255 DMS.11: 5 residues within 4Å: Chain A: Y.33, E.48, W.75, P.76, R.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.79 Salt bridges: A:E.48

1 x 657: 6-(trifluoromethoxy)-1,3-benzothiazol-2-amine(Non-covalent)

657.12: 10 residues within 4Å: Chain A: W.51, Y.52, V.110, A.156, T.159, F.191, F.242, F.243, A.265 Ligands: SO4.16 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.52, A:V.110, A:A.156 Hydrogen bonds: A:F.242 Water bridges: A:A.156 pi-Stacking: A:F.191, A:F.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Notum Inhibitor. To Be Published

Release Date

2022-03-02

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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