7mr7.1 | SWISS-MODEL Template Library

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SMTL ID : 7mr7.1

Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-075

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94
EDO.3:	5 residues within 4Å: Chain B: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.61, B:T.62, B:T.62, B:N.94, B:N.94
EDO.4:	3 residues within 4Å: Chain B: F.38, D.104, L.107 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.104 Water bridges: A:Q.118

1 x ZN1: 4-[(4-{4-chloro-3-[(2-methylpropane-2-sulfonyl)amino]anilino}-5-methylpyrimidin-2-yl)amino]-2-fluoro-N-[1-(14-{3-[(2-{3-fluoro-4-[(piperidin-4-yl)carbamoyl]anilino}-5-methylpyrimidin-4-yl)amino]-5-[(2-methylpropane-2-sulfonyl)amino]phenyl}-14-oxo-4,7,10-trioxa-13-azatetradecanan-1-oyl)piperidin-4-yl]benzamide(Non-covalent)

ZN1.2:

27 residues within 4Å:

Chain A: Q.37, F.38, W.40, P.41, F.42, V.46, L.51, N.52, L.53, Y.98, N.99, D.104, I.105, M.108
Chain B: W.40, P.41, F.42, Q.44, P.45, V.46, D.47, K.50, L.51, N.52, L.53, N.99, I.105

25 PLIP interactions:

13 interactions with chain B, 12 interactions with chain A

Hydrophobic interactions: B:P.41, B:F.42, B:Q.44, B:V.46, B:L.51, B:L.53, A:Q.37, A:F.38, A:P.41, A:F.42, A:V.46, A:L.51, A:L.53
Hydrogen bonds: B:P.41, B:D.47, B:K.50, B:L.51, B:N.99, B:N.99, A:P.41, A:L.51, A:N.52, A:N.99, A:N.99
Water bridges: B:Y.56

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Guan, X. et al., Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. (2022)

Release Date

2022-05-11

Peptides

Bromodomain-containing protein 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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