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SMTL ID : 7mr9.1

Crystal structure of the first bromodomain (BD1) of human BRD4 bound to NC-II-153

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.19 Å

Oligo State

monomer

Ligands

1 x ZMM: 2-methyl-4-[3-(2-oxopyrrolidin-1-yl)phenyl]isoquinolin-1(2H)-one(Non-covalent)

ZMM.1:

12 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, P.45, V.46, D.47, L.51, L.53, Y.56, N.99, I.105

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:Q.44, A:D.47, A:L.51, A:L.53
Hydrogen bonds: A:D.47, A:N.99

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	7 residues within 4Å: Chain A: R.17, Q.18, L.22, Q.23, L.26, L.73, N.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.17
EDO.3:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62
EDO.4:	4 residues within 4Å: Chain A: W.40, D.104, I.105, M.108 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.105

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Guan, X. et al., Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. (2022)

Release Date

2022-08-03

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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