SMTL ID : 7mra.1

Crystal structure of the first bromodomain (BD1) of human BRD4 bound to NC-II-259

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

monomer

Ligands

1 x ZMJ: N-[3-(2-methyl-1-oxo-1,2-dihydroisoquinolin-4-yl)phenyl]ethanesulfonamide(Non-covalent)

ZMJ.1: 12 residues within 4Å: Chain A: W.40, P.41, F.42, Q.44, P.45, V.46, D.47, K.50, L.51, L.53, N.99, I.105 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.40, A:P.41, A:Q.44, A:L.51, A:L.51, A:L.53 Hydrogen bonds: A:D.47, A:K.50, A:N.99

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guan, X. et al., Bivalent BET Bromodomain Inhibitors Confer Increased Potency and Selectivity for BRDT via Protein Conformational Plasticity. J.Med.Chem. (2022)

Release Date

2022-08-03

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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