SMTL ID : 7pjr.1

Notum_ARUK3000438

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: N.19, S.21, V.22, M.126, L.129 No protein-ligand interaction detected (PLIP)

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: R.42, Y.94, W.95, W.96, N.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.42, A:N.97 pi-Cation interactions: A:W.96 DMS.3: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.248, A:V.255

1 x 7SQ: 1-[4-chloranyl-3-(trifluoromethyl)phenyl]-1,2,3-triazole(Non-covalent)

7SQ.4: 15 residues within 4Å: Chain A: G.50, W.51, Y.52, V.110, S.155, A.156, T.159, F.191, P.210, I.214, F.242, F.243, A.265, V.269, H.312 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.52, A:F.191 Hydrogen bonds: A:W.51, A:A.156

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: R.198 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.198 SO4.6: 4 residues within 4Å: Chain A: R.332, H.335, R.339, C.355 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.332, A:H.335, A:R.339 SO4.7: 4 residues within 4Å: Chain A: V.279, Q.280, E.281, R.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.281 Salt bridges: A:R.284 SO4.8: 3 residues within 4Å: Chain A: Y.197, R.198, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.197, A:Y.197 Salt bridges: A:R.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Willis, N.J. et al., Design of a Potent, Selective, and Brain-Penetrant Inhibitor of Wnt-Deactivating Enzyme Notum by Optimization of a Crystallographic Fragment Hit. J.Med.Chem. (2022)

Release Date

2022-09-07

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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