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SMTL ID : 7qdl.1

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 with I-BET567

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x AKQ: (2S,4R)-1-acetyl-4-((5-chloropyrimidin-2-yl)amino)-2-methyl-1,2,3,4-tetrahydroquinoline-6-carboxamide(Non-covalent)

AKQ.1:

13 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, N.99, I.105, M.108
Ligands: EDO.4

9 PLIP interactions:

9 interactions with chain A

Hydrophobic interactions: A:P.41, A:F.42, A:V.46, A:L.51, A:L.53, A:Y.56, A:I.105
Hydrogen bonds: A:Q.44, A:N.99

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	7 residues within 4Å: Chain A: S.10, N.11, P.12, K.14, K.16, N.75, Y.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11
EDO.3:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.61, A:T.62, A:N.94, A:N.94 Water bridges: A:I.59
EDO.4:	3 residues within 4Å: Chain A: W.40, L.51 Ligands: AKQ.1 No protein-ligand interaction detected (PLIP)

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Humphreys, P.G. et al., Design, Synthesis, and Characterization of I-BET567, a Pan-Bromodomain and Extra Terminal (BET) Bromodomain Oral Candidate. J.Med.Chem. (2022)

Release Date

2022-12-14

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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