SMTL ID : 7qvz.1

ARUK3001043_Notum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.19, V.22, L.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: S.40, R.41, R.42 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.41, A:R.42 EDO.4: 3 residues within 4Å: Chain A: R.295, H.296, K.299 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.296, A:K.299

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.65, M.66, R.67, R.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.67, A:R.68 Salt bridges: A:R.68

1 x FNW: [1-[2,4-bis(chloranyl)-3-(trifluoromethyl)phenyl]-1,2,3-triazol-4-yl]methanol(Non-covalent)

FNW.5: 13 residues within 4Å: Chain A: G.50, W.51, Y.52, S.155, A.156, T.159, F.191, P.210, I.214, F.242, F.243, A.265, V.269 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.50, A:W.51, A:S.155, A:A.156 Water bridges: A:W.51 pi-Stacking: A:W.51, A:F.191

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 6 residues within 4Å: Chain A: Y.248, L.251, R.252, S.253, P.254, V.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.248, A:V.255 DMS.7: 2 residues within 4Å: Chain A: R.228, R.231 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structure Activity Analysis of Notum Fragment Screen Hits with Development. To Be Published

Release Date

2022-05-04

Peptides

Palmitoleoyl-protein carboxylesterase NOTUM: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Palmitoleoyl-protein carboxylesterase NOTUM

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