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SMTL ID : 7rjo.1

Crystal structure of human Bromodomain containing protein 4 (BRD4) in complex with hnRNPK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.38 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1:

6 residues within 4Å:

Chain A: F.42, Y.56, M.91, N.94, C.95
Chain B: K.4

3 PLIP interactions:

3 interactions with chain A

Hydrogen bonds: A:M.91, A:C.95
Water bridges: A:N.94

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2:	1 residues within 4Å: Chain A: W.40 No protein-ligand interaction detected (PLIP)
GOL.3:	4 residues within 4Å: Chain A: Q.18, T.19, N.20, Q.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.20

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4:	7 residues within 4Å: Chain A: Q.82, I.85, N.89, F.116, L.117, I.120 Ligands: ACT.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.85 Hydrogen bonds: A:N.89, A:N.89
ACT.5:	5 residues within 4Å: Chain A: Q.82, I.85, Q.86, N.89 Ligands: ACT.4 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.86

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wagner, S. et al., Uncovering the Bromodomain Interactome using Site-Specific Azide-Acetyllysine Photochemistry, Proteomic Profiling and Structural Characterization. Biorxiv (2021)

Release Date

2022-08-03

Peptides

Bromodomain-containing protein 4: A
Heterogeneous nuclear ribonucleoprotein K: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

Heterogeneous nuclear ribonucleoprotein K

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