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SMTL ID : 7rjq.1

Crystal structure of human Bromodomain containing protein 4 (BRD4) in complex with ILF3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

1 x ALA- ALY- GLY- LEU- LEU- LEU- ALY- GLY: Interleukin enhancer-binding factor 3(Non-covalent)

ALA-ALY-GLY-LEU-LEU-LEU-ALY-GLY.1:

12 residues within 4Å:

Chain A: P.41, F.42, V.46, K.50, L.51, L.53, C.95, Y.98, N.99, D.103, I.105
Ligands: CL.10

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:P.41, A:F.42, A:V.46, A:K.50, A:L.51, A:L.51, A:L.51, A:L.53, A:Y.98, A:I.105
Hydrogen bonds: A:N.99, A:D.103
Water bridges: A:P.41, A:Y.98

5 x NA: SODIUM ION(Non-functional Binders)

NA.2:	2 residues within 4Å: Chain A: T.19, N.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.20, A:N.20
NA.3:	2 residues within 4Å: Chain A: R.17, Q.18 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.18, A:Q.18
NA.4:	0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)
NA.5:	1 residues within 4Å: Chain A: N.80 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.80, A:N.80
NA.6:	5 residues within 4Å: Chain A: L.53, P.54, D.55, Y.56, Y.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.55, A:D.55, A:Y.56

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.7:	4 residues within 4Å: Chain A: T.19, Q.21, N.80, A.81 Ligand excluded by PLIP
CL.8:	3 residues within 4Å: Chain A: M.2, N.3, V.49 Ligand excluded by PLIP
CL.10:	4 residues within 4Å: Ligands: ALA-ALY-GLY-LEU-LEU-LEU-ALY-GLY.1, ALA-ALY-GLY-LEU-LEU-LEU-ALY-GLY.1, ALA-ALY-GLY-LEU-LEU-LEU-ALY-GLY.1, ALA-ALY-GLY-LEU-LEU-LEU-ALY-GLY.1 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.9:

5 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Wagner, S. et al., Uncovering the Bromodomain Interactome using Site-Specific Azide-Acetyllysine Photochemistry, Proteomic Profiling and Structural Characterization. To Be Published

Release Date

2022-08-03

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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