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SMTL ID : 7ugf.1

First bromodomain of BRD4 liganded with BMS-536924

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x N6I: (3M)-4-{[(2S)-2-(3-chlorophenyl)-2-hydroxyethyl]amino}-3-[4-methyl-6-(morpholin-4-yl)-1H-benzimidazol-2-yl]pyridin-2(1H)-one(Non-covalent)

N6I.1:

10 residues within 4Å:

Chain A: W.40, P.41, V.46, L.51, L.53, Y.56, Y.98, N.99, I.105, M.108

6 PLIP interactions:

6 interactions with chain A

Hydrophobic interactions: A:W.40, A:P.41, A:L.53, A:I.105
Hydrogen bonds: A:N.99
Water bridges: A:Y.56

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62 Water bridges: A:T.62, A:T.62
EDO.3:	4 residues within 4Å: Chain A: P.101, G.102, V.106, E.110 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.102 Water bridges: A:E.110
EDO.4:	3 residues within 4Å: Chain A: Q.118, K.119, E.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.119, A:E.122
EDO.5:	4 residues within 4Å: Chain A: I.85, N.89, L.117, I.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.89
EDO.6:	6 residues within 4Å: Chain A: Q.44, P.45, D.65, G.67, T.68, K.71 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.71

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Schonbrunn, E. et al., Structural basis of CBP and EP300 interaction with kinase inhibitors. To Be Published

Release Date

2023-04-12

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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