SMTL ID : 7uty.1

First bromodomain of BRD4 liganded with compound 2c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x OFR: prop-2-en-1-yl (5S)-1-ethyl-7-methyl-5-(4-methylphenyl)-2,4-dioxo-1,2,3,4,5,8-hexahydropyrido[2,3-d]pyrimidine-6-carboxylate(Non-covalent)

OFR.1: 13 residues within 4Å: Chain A: W.40, P.41, F.42, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, D.104, I.105, M.108 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.40, A:W.40, A:F.42, A:L.53, A:D.104, A:I.105, A:I.105 Hydrogen bonds: A:N.99, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, P.63, T.90, T.93, N.94, I.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:T.62, A:N.94 EDO.3: 7 residues within 4Å: Chain A: R.17, T.19, Q.21, L.22, N.80, A.81, Q.82 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.19, A:A.81 Water bridges: A:T.19, A:Q.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, J. et al., 1,4-Dihydropyridinebutyrolactone-derived ring-opened ester and amide analogs targeting BET bromodomains. Arch Pharm (2022)

Release Date

2022-08-24

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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