SMTL ID : 9bsb.1

Global reconstruction of DRD2 bound to LSD in complex with a mini-GoA and scFv16 obtained by cryo-electron microscopy (cryoEM)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.32 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x 7LD: (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide(Non-covalent)

7LD.1: 15 residues within 4Å: Chain C: F.255, V.256, D.259, V.260, C.263, T.264, I.329, S.338, S.339, S.342, F.534, F.535, H.538, T.557, Y.561 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:F.255, C:V.256, C:V.260, C:I.329, C:F.534, C:F.535 Hydrogen bonds: C:S.342, C:S.342 Salt bridges: C:D.259 pi-Stacking: C:F.535

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jain, M.K. et al., The polypharmacology of psychedelics reveals multiple targets for potential therapeutics. Neuron (2025)

Release Date

2025-09-17

Peptides

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: B
Soluble cytochrome b562,D(2) dopamine receptor: C
Single chain Fab 16 (scFv16): D
Guanine nucleotide-binding protein G(o) subunit alpha: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
R

D
E

E
A

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Soluble cytochrome b562,D(2) dopamine receptor

Single chain Fab 16 (scFv16)

Guanine nucleotide-binding protein G(o) subunit alpha

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