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SMTL ID : 8b96.1

Crystal structure of the human BRD4-BD1 bromodomain in complex with the inhibitor CRCM5464

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

1 x Q2F: ~{N}-[[4-[[7-ethyl-2,6-bis(oxidanylidene)purin-3-yl]methyl]cyclohexyl]methyl]-3-fluoranyl-4-(oxan-4-yloxy)benzenesulfonamide(Non-covalent)

Q2F.1:

12 residues within 4Å:

Chain A: F.38, W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, L.107, M.108

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:F.38, A:F.42
Hydrogen bonds: A:N.99, A:N.99

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	3 residues within 4Å: Chain A: P.5, P.6, E.8 No protein-ligand interaction detected (PLIP)
EDO.4:	4 residues within 4Å: Chain A: T.19, N.20, E.126, E.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.20, A:E.126, A:E.127 Water bridges: A:Q.21

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:

6 residues within 4Å:

Chain A: I.59, I.60, K.61, T.62, N.94, I.97

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:K.61, A:T.62

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Carrasco, K. et al., Crystal structure of the human BRD4-BD1 bromodomain in complex with the inhibitor CRCM5464. To Be Published

Release Date

2024-04-03

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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