SMTL ID : 8b98.1

Crystal structure of the human BRD4-BD1 bromodomain in complex with the inhibitor CRCM5483

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x Q2F: ~{N}-[[4-[[7-ethyl-2,6-bis(oxidanylidene)purin-3-yl]methyl]cyclohexyl]methyl]-3-fluoranyl-4-(oxan-4-yloxy)benzenesulfonamide(Non-covalent)

Q2F.1: 12 residues within 4Å: Chain A: F.38, W.40, P.41, F.42, V.46, L.51, L.53, N.99, D.104, I.105, L.107, M.108 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.38, A:P.41, A:F.42, A:I.105 Hydrogen bonds: A:N.99, A:N.99

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: P.5, P.6, E.8 No protein-ligand interaction detected (PLIP) EDO.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, N.94 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.61, A:T.62, A:N.94 Water bridges: A:T.62

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 5 residues within 4Å: Chain A: R.72, Y.78, E.83, Q.86, D.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.72 Salt bridges: A:E.83, A:D.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carrasco, K. et al., Crystal structure of the human BRD4-BD1 bromodomain in complex with the inhibitor CRCM5464. To Be Published

Release Date

2024-04-03

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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