SMTL ID : 8guj.1

Bre1-nucleosome complex (Model II)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain K: C.937, H.939, C.957, C.960 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.937, K:H.939, K:C.957, K:C.960 ZN.2: 5 residues within 4Å: Chain K: C.922, C.925, R.928, C.942, C.945 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.922, K:C.925, K:C.942, K:C.945 ZN.3: 5 residues within 4Å: Chain L: C.963, H.965, C.983, K.985, C.986 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.963, L:H.965, L:C.983, L:C.986 ZN.4: 5 residues within 4Å: Chain L: C.948, C.951, R.954, C.968, C.971 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.948, L:C.951, L:C.968, L:C.971

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Onishi, S. et al., Structure of the human Bre1 complex bound to the nucleosome. Nat Commun (2024)

Release Date

2023-09-20

Peptides

Histone H3.1: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B type 1-J: DH
E3 ubiquitin-protein ligase BRE1A: K
E3 ubiquitin-protein ligase BRE1B: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

L
L

Histone H3.1

Histone H4

Histone H2A type 1

Histone H2B type 1-J

E3 ubiquitin-protein ligase BRE1A

E3 ubiquitin-protein ligase BRE1B

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