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SMTL ID : 8qal.1

Crystal Structure of the first bromodomain of BRD4 in complex with acetyl-pyrrole derivative compound 83

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x GQX: 2-[4-(3-methyl-4-oxidanylidene-2,5,6,7-tetrahydroisoindol-1-yl)-1,3-thiazol-2-yl]guanidine

GQX.1:

13 residues within 4Å:

Chain A: W.40, P.41, F.42, Q.44, V.46, L.51, L.53, Y.56, C.95, Y.98, N.99, I.105
Ligands: EDO.4

10 PLIP interactions:

10 interactions with chain A

Hydrophobic interactions: A:F.42, A:V.46, A:L.53, A:Y.98, A:I.105
Hydrogen bonds: A:P.41, A:Q.44, A:Q.44, A:N.99
Water bridges: A:Q.44

3 x EDO: 1,2-ETHANEDIOL

EDO.2:	8 residues within 4Å: Chain A: I.59, I.60, K.61, T.62, T.90, T.93, N.94, I.97 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.59, A:K.61, A:T.62, A:T.62, A:N.94
EDO.3:	3 residues within 4Å: Chain A: T.93, Y.96, I.97 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.93
EDO.4:	6 residues within 4Å: Chain A: W.40, P.41, D.104, I.105, M.108 Ligands: GQX.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.104, A:I.105

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Cazzanelli, G. et al., Dual BET/BRPF1 inhibitors induce morphological alteration and cellular death in various human cancer cell lines. To be published

Release Date

2024-09-11

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Bromodomain-containing protein 4

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