SMTL ID : 4tu4.1

Crystal structure of ATAD2A bromodomain complexed with 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(phenylsulfonyl)amino]benzoicacid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.10, F.14, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 GOL.3: 3 residues within 4Å: Chain A: R.104, D.105, Y.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.104, A:D.105, A:D.105

1 x 37N: 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(phenylsulfonyl)amino]benzoic acid(Non-covalent)

37N.4: 10 residues within 4Å: Chain A: R.29, V.30, K.33, V.35, D.36, E.39, Y.43, Y.85, N.86, I.96 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.30, A:K.33, A:V.35, A:Y.85 Hydrogen bonds: A:D.36, A:N.86 Water bridges: A:R.29

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: R.99 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 2 residues within 4Å: Chain A: K.69, L.115 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poncet-Montange, G. et al., Observed bromodomain flexibility reveals histone peptide- and small molecule ligand-compatible forms of ATAD2. Biochem.J. (2015)

Release Date

2014-12-24

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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