SMTL ID : 6hi6.1

The ATAD2 bromodomain in complex with compound 9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16 SO4.2: 1 residues within 4Å: Chain A: R.99 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.99, A:R.99 Salt bridges: A:R.99

2 x G5Z: (2~{R})-2-azanyl-~{N}-(4-ethanoyl-5-pyridin-3-yl-1,3-thiazol-2-yl)propanamide(Non-covalent)

G5Z.3: 6 residues within 4Å: Chain A: V.30, V.35, A.82, N.86, G.92, D.93 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.35 Hydrogen bonds: A:N.86, A:N.86, A:G.92 G5Z.4: 4 residues within 4Å: Chain A: H.20, A.23, I.24, T.32 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolbois, A. et al., Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers. Acs Med.Chem.Lett. (2020)

Release Date

2019-02-20

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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