SMTL ID : 6epj.1

The ATAD2 bromodomain in complex with compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x BOH: (2~{R})-2-azanyl-~{N}-[4-ethanoyl-5-(3-hydroxyphenyl)-1,3-thiazol-2-yl]propanamide(Non-covalent)

BOH.1: 9 residues within 4Å: Chain A: R.29, V.30, F.31, V.35, Y.85, N.86, G.92, D.93, I.96 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.30, A:F.31, A:V.35 Hydrogen bonds: A:R.29, A:N.86, A:N.86, A:N.86 Water bridges: A:R.29, A:D.93 BOH.2: 9 residues within 4Å: Chain A: V.68, K.69, L.72, Y.108, I.111, K.112, L.115, E.117, E.120 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.68, A:L.72, A:I.111, A:L.115, A:E.117 Hydrogen bonds: A:E.117 Water bridges: A:Y.108

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolbois, A. et al., Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers. Acs Med.Chem.Lett. (2020)

Release Date

2018-10-31

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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