SMTL ID : 6hi5.1

The ATAD2 bromodomain in complex with compound 8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: R.89 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.89, A:R.89 Salt bridges: A:R.89 SO4.2: 1 residues within 4Å: Chain A: R.99 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.99, A:R.99 Salt bridges: A:R.99

3 x G6E: (2~{R})-2-azanyl-~{N}-[5-(5-azanylpyridin-3-yl)-4-ethanoyl-1,3-thiazol-2-yl]propanamide(Non-covalent)

G6E.3: 6 residues within 4Å: Chain A: H.20, A.23, I.24, R.29, T.32, I.57 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.57 Hydrogen bonds: A:H.20, A:A.23 Water bridges: A:H.20 pi-Cation interactions: A:H.20 G6E.4: 6 residues within 4Å: Chain A: V.30, V.35, N.86, G.92, D.93, I.96 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35 Hydrogen bonds: A:N.86, A:N.86, A:G.92 G6E.5: 3 residues within 4Å: Chain A: S.1, Q.3, E.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.3 Hydrogen bonds: A:S.1 Water bridges: A:E.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolbois, A. et al., Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers. Acs Med.Chem.Lett. (2020)

Release Date

2019-02-20

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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