SMTL ID : 7z9j.1

ATAD2 in complex with PepLite-Gly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.12, A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16 SO4.9: 1 residues within 4Å: Chain A: K.64 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.59 Salt bridges: A:K.59, A:K.64

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.99 Ligand excluded by PLIP

1 x IIY: (~{N}~{E})-2-acetamido-~{N}-prop-2-enylidene-ethanamide(Covalent)

IIY.3: 4 residues within 4Å: Chain A: R.94, R.97, H.98, C.101 No protein-ligand interaction detected (PLIP)

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.10, A:E.10, A:E.114, A:D.116 EDO.5: 2 residues within 4Å: Chain A: H.20, A.23 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.20 EDO.6: 4 residues within 4Å: Chain A: K.69, L.72, R.73, Y.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.108, A:Y.108 Water bridges: A:R.73 EDO.7: 3 residues within 4Å: Chain A: S.58, K.59, L.62 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain A: V.68, K.69, L.72, E.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.69, A:E.120, A:E.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davison, G. et al., Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

ATPase family AAA domain-containing protein 2

Related Entries With Identical Sequence