SMTL ID : 6epw.1

The ATAD2 bromodomain in complex with compound UZH-DU32

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

2 x BQ8: (2~{R})-~{N}-[5-[3,5-bis(oxidanyl)phenyl]-4-ethanoyl-1,3-thiazol-2-yl]-2-carbamimidamido-propanamide(Non-covalent)

BQ8.1: 7 residues within 4Å: Chain A: V.30, V.35, Y.43, Y.85, N.86, G.92, D.93 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35 Hydrogen bonds: A:P.34, A:Y.85, A:Y.85, A:Y.85, A:N.86, A:N.86 Salt bridges: A:D.93 BQ8.2: 8 residues within 4Å: Chain A: P.34, V.35, P.37, D.38, Y.43, V.44, I.47, P.50 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.37, A:V.44, A:V.44, A:P.50 Hydrogen bonds: A:I.47

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.9, R.12, R.16 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.9, A:R.12, A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sledz, P., Hitting a moving target: simulation and crystallography study of ATAD2 bromodomain blockers. To Be Published

Release Date

2018-10-31

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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