SMTL ID : 5a5o.1

Crystal structure of human ATAD2 bromodomain in complex with 3-methyl- 1,2-dihydroquinolin-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: V.44, I.47, K.48, P.50 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.44 Water bridges: A:K.48 EDO.2: 4 residues within 4Å: Chain A: E.113, E.114, L.115, D.116 No protein-ligand interaction detected (PLIP) EDO.3: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.10, A:E.10, A:E.114, A:D.116

1 x J5I: 3-METHYL-1,2-DIHYDROQUINOLIN-2-ONE(Non-covalent)

J5I.4: 7 residues within 4Å: Chain A: V.30, V.35, V.40, Y.43, Y.85, N.86, I.96 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35, A:V.40, A:I.96 Hydrogen bonds: A:N.86, A:N.86

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: R.9, R.12, R.16 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.12, A:R.16, A:H.63 Salt bridges: A:R.9, A:R.12, A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Demont, E.H. et al., Fragment-Based Discovery of Low-Micromolar Atad2 Bromodomain Inhibitors. J.Med.Chem. (2015)

Release Date

2015-07-22

Peptides

ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 2

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