SMTL ID : 6ept.1

The ATAD2 bromodomain in complex with compound 12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16

1 x G1E: (2~{R})-~{N}-[5-(5-azanylpyridin-3-yl)-4-ethanoyl-1,3-thiazol-2-yl]piperazine-2-carboxamide(Non-covalent)

G1E.2: 8 residues within 4Å: Chain A: V.30, V.35, V.40, Y.85, N.86, D.90, D.93, I.96 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35 Hydrogen bonds: A:V.30, A:N.86, A:N.86

1 x BQQ: (2~{S})-~{N}-[5-(5-azanylpyridin-3-yl)-4-ethanoyl-1,3-thiazol-2-yl]piperazine-2-carboxamide(Non-covalent)

BQQ.3: 5 residues within 4Å: Chain A: R.94, R.97, H.98, C.101, A.102 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.98 Hydrogen bonds: A:R.97, A:R.97, A:H.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolbois, A. et al., Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers. Acs Med.Chem.Lett. (2020)

Release Date

2018-10-31

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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