SMTL ID : 7q6u.1

Crystal structure of the bromodomain of ATAD2 with phenol HTS hit (cpd 6)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16 SO4.2: 5 residues within 4Å: Chain A: E.10, E.114, L.115, D.116, F.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.10, A:D.116 SO4.3: 1 residues within 4Å: Chain A: K.59 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.59, A:K.64

1 x 963: (1R,9S)-13-(3,5-dimethoxy-4-oxidanyl-phenyl)carbonyl-11,13-diazatricyclo[7.3.1.0^{2,7}]trideca-2,4,6-trien-10-one(Non-covalent)

963.4: 12 residues within 4Å: Chain A: R.29, V.30, F.31, T.32, K.33, V.35, D.36, E.39, Y.43, Y.85, N.86, I.96 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.30, A:V.30, A:K.33, A:I.96 Hydrogen bonds: A:D.36, A:E.39, A:N.86 Water bridges: A:N.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winter-Holt, J.J. et al., Discovery of a Potent and Selective ATAD2 Bromodomain Inhibitor with Antiproliferative Activity in Breast Cancer Models. J.Med.Chem. (2022)

Release Date

2022-01-19

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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