SMTL ID : 7r05.1

ATAD2 in complex with PepLite-Ile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.16, A:H.63 Salt bridges: A:R.9, A:R.12, A:R.16 SO4.5: 2 residues within 4Å: Chain A: K.59, K.64 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.59, A:K.59 Salt bridges: A:K.59, A:K.64

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.99 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: E.10, L.11, F.14, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.10, A:D.116 EDO.4: 5 residues within 4Å: Chain A: T.19, H.20, A.23, I.24, I.57 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.20

1 x HQX: (2~{S},3~{S})-2-acetamido-~{N}-(3-bromanylprop-2-ynyl)-3-methyl-pentanamide(Non-covalent)

HQX.6: 9 residues within 4Å: Chain A: V.30, F.31, V.35, V.40, Y.43, A.82, Y.85, N.86, I.96 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.35, A:V.40, A:V.40, A:Y.43 Hydrogen bonds: A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davison, G. et al., Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

ATPase family AAA domain-containing protein 2

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