SMTL ID : 6hic.1

The ATAD2 bromodomain in complex with compound 15

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

2 x G7H: (2~{R})-~{N}-[4-ethanoyl-5-[4-(2-oxidanylidenepyrrolidin-1-yl)phenyl]-1,3-thiazol-2-yl]piperazine-2-carboxamide(Non-covalent)

G7H.1: 14 residues within 4Å: Chain A: R.29, V.30, K.33, P.34, V.35, D.36, V.40, A.82, Y.85, N.86, D.90, D.93, I.96 Ligands: G7H.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.30, A:K.33, A:V.35, A:V.35, A:V.40 Hydrogen bonds: A:D.36, A:Y.85, A:N.86, A:N.86 Water bridges: A:Y.85, A:Y.85 G7H.2: 8 residues within 4Å: Chain A: R.29, V.30, E.39, V.40, G.92, I.96, R.99 Ligands: G7H.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.30, A:E.39, A:I.96 Hydrogen bonds: A:R.29, A:R.99 Water bridges: A:R.99

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.9, R.12, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolbois, A. et al., Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers. Acs Med.Chem.Lett. (2020)

Release Date

2019-02-20

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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