SMTL ID : 7qyl.1

ATAD2 in complex with FragLite23

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.9, R.12, I.13, R.16 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.12, A:H.63 Salt bridges: A:R.9, A:R.12, A:R.16 SO4.11: 2 residues within 4Å: Chain A: K.59, K.64 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.59, A:K.64

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: L.95, R.99 Ligand excluded by PLIP

2 x UU1: 2-(4-bromo-1H-pyrazol-1-yl)ethan-1-ol(Non-covalent)

UU1.3: 7 residues within 4Å: Chain A: D.76, C.79, S.80, L.83, C.101, R.104 Ligands: UU1.4 1 PLIP interactions: 1 interactions with chain A Halogen bonds: A:D.76 UU1.4: 6 residues within 4Å: Chain A: L.83, R.94, R.97, H.98, C.101 Ligands: UU1.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.97

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 7 residues within 4Å: Chain A: E.10, L.11, F.14, E.114, L.115, D.116, F.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.10, A:D.116 EDO.6: 8 residues within 4Å: Chain A: R.21, L.22, D.25, R.27, F.28, T.106, I.110 Ligands: EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.25, A:R.27 EDO.7: 6 residues within 4Å: Chain A: T.106, A.109, I.110, E.113 Ligands: EDO.6, EDO.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.113 Water bridges: A:E.113 EDO.8: 5 residues within 4Å: Chain A: S.55, S.58, K.59, L.62, K.64 No protein-ligand interaction detected (PLIP) EDO.9: 6 residues within 4Å: Chain A: V.68, K.69, L.72, I.111, L.115, E.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.120, A:E.120 EDO.10: 4 residues within 4Å: Chain A: D.105, T.106, A.109 Ligands: EDO.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.106 Water bridges: A:T.106, A:T.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davison, G. et al., Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

ATPase family AAA domain-containing protein 2

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