SMTL ID : 7z9u.1

ATAD2 in complex with Acetyl-Lys

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x ARG: ARGININE(Covalent)

ARG.1: 6 residues within 4Å: Chain A: L.66, I.126, Q.127, E.128, S.129, R.130 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:R.130, A:R.130 Hydrogen bonds: A:I.126, A:R.130, A:R.130

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.9, R.12, R.16 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.9, A:R.12, A:R.16 SO4.9: 1 residues within 4Å: Chain A: K.64 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.64

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.99 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 6 residues within 4Å: Chain A: E.10, F.14, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 EDO.5: 3 residues within 4Å: Chain A: H.20, A.23, I.57 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: K.69, L.115, E.120 Ligands: EDO.7 No protein-ligand interaction detected (PLIP) EDO.7: 6 residues within 4Å: Chain A: K.69, L.72, R.73, D.76, Y.108 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.108 EDO.8: 3 residues within 4Å: Chain A: S.58, K.59, L.62 No protein-ligand interaction detected (PLIP)

1 x 8WS: (2S)-2,6-diacetamido-N-methyl-hexanamide(Non-covalent)

8WS.10: 8 residues within 4Å: Chain A: V.30, V.35, E.39, V.40, D.42, Y.43, Y.85, N.86 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.30, A:V.35, A:V.40 Hydrogen bonds: A:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davison, G. et al., Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

ATPase family AAA domain-containing protein 2

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