SMTL ID : 6epx.1

The ATAD2 bromodomain in complex with compound 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

2 x BQW: (2~{R})-2-carbamimidamido-~{N}-(4-ethanoyl-1,3-thiazolidin-2-yl)propanamide(Non-covalent)

BQW.1: 7 residues within 4Å: Chain A: V.30, V.35, A.82, Y.85, N.86, G.92, D.93 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.35 Hydrogen bonds: A:Y.85, A:Y.85, A:Y.85, A:N.86, A:N.86 Salt bridges: A:D.93 BQW.2: 3 residues within 4Å: Chain A: L.83, C.101, D.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.105 Water bridges: A:H.98, A:D.105

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.9, R.12, R.16 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.9, A:R.12, A:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dolbois, A. et al., Hitting a Moving Target: Simulation and Crystallography Study of ATAD2 Bromodomain Blockers. Acs Med.Chem.Lett. (2020)

Release Date

2018-10-31

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATPase family AAA domain-containing protein 2

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