SMTL ID : 7z9h.1

ATAD2 in complex with PepLite-Asp

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.9, R.12, R.16 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.9, A:R.16, A:R.16, A:R.16 Salt bridges: A:R.9, A:R.12, A:R.16 SO4.7: 2 residues within 4Å: Chain A: K.59, K.64 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.59, A:K.59 Salt bridges: A:K.59, A:K.64

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.99 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 6 residues within 4Å: Chain A: E.10, F.14, E.114, L.115, D.116, F.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:E.114, A:D.116 EDO.4: 4 residues within 4Å: Chain A: K.69, L.72, R.73, Y.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.108 EDO.5: 3 residues within 4Å: Chain A: K.69, L.115, E.120 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.120 EDO.6: 3 residues within 4Å: Chain A: R.104, D.105, Y.108 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.105, A:D.105

1 x IIV: (2~{S})-2-acetamido-~{N}-(3-bromanylprop-2-ynyl)butanediamide(Non-covalent)

IIV.8: 8 residues within 4Å: Chain A: V.30, V.35, E.39, V.40, Y.43, Y.85, N.86, I.96 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.96 Hydrogen bonds: A:N.86, A:N.86, A:N.86 Water bridges: A:V.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davison, G. et al., Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

ATPase family AAA domain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

ATPase family AAA domain-containing protein 2

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