SMTL ID : 5ukm.1

bovine GRK2 in complex with human Gbetagamma subunits and CCG258208 (14as)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x T0E: 5-[(3S,4R)-3-{[(2H-1,3-benzodioxol-5-yl)oxy]methyl}piperidin-4-yl]-2-fluoro-N-[(1H-pyrazol-5-yl)methyl]benzamide(Non-covalent)

T0E.1: 25 residues within 4Å: Chain A: I.197, G.198, R.199, G.200, G.201, F.202, G.203, E.204, V.205, A.218, K.220, L.222, E.239, V.255, L.271, D.272, M.274, D.278, A.321, L.324, S.334, D.335, A.480, D.481, A.482 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.197, A:F.202, A:V.205, A:V.205, A:L.324, A:A.482 Hydrogen bonds: A:G.201, A:F.202, A:G.203, A:K.220, A:M.274, A:D.335, A:D.335

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: H.348, E.360, V.361, Q.363, V.366, Y.368 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.348, A:E.360, A:Q.363, A:V.366

1 x CMT: O-METHYLCYSTEINE(Covalent)

CMT.3: 1 residues within 4Å: Chain C: F.67 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waldschmidt, H.V. et al., Structure-Based Design of Highly Selective and Potent G Protein-Coupled Receptor Kinase 2 Inhibitors Based on Paroxetine. J. Med. Chem. (2017)

Release Date

2017-04-12

Peptides

Beta-adrenergic receptor kinase 1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

Beta-adrenergic receptor kinase 1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

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