SMTL ID : 6o96.1

Dot1L bound to the H2BK120 Ubiquitinated nucleosome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 13 residues within 4Å: Chain K: Y.135, T.138, G.162, S.163, Q.167, E.185, K.186, A.187, G.220, D.221, F.222, F.238, F.244 9 PLIP interactions: 9 interactions with chain K Hydrophobic interactions: K:Y.135 Hydrogen bonds: K:T.138, K:T.138, K:G.162, K:Q.167, K:K.186, K:D.221, K:F.222 pi-Stacking: K:F.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valencia-Sanchez, M.I. et al., Structural Basis of Dot1L Stimulation by Histone H2B Lysine 120 Ubiquitination. Mol.Cell (2019)

Release Date

2019-04-24

Peptides

Histone H3.2: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
Histone-lysine N-methyltransferase, H3 lysine-79 specific: K
Polyubiquitin-B: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
K

L
L

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

Histone-lysine N-methyltransferase, H3 lysine-79 specific

Polyubiquitin-B

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