SMTL ID : 6orv.1

Non-peptide agonist (TT-OAD2) bound to the Glucagon-Like peptide-1 (GLP-1) Receptor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x N2V: N-{(3S,8S)-3-{4-[(3,4-dichlorophenyl)methoxy]phenyl}-7-[(1S)-1-phenylpropyl]-2,3,6,7,8,9-hexahydro[1,4]dioxino[2,3-g]isoquinoline-8-carbonyl}-4-(2,3-dimethylpyridin-4-yl)-L-phenylalanine(Non-covalent)

N2V.1: 13 residues within 4Å: Chain E: Y.154, Y.157, V.203, K.206, D.207, A.209, L.210, W.212, M.213, L.226, Y.229, F.239, W.306 22 PLIP interactions: 22 interactions with chain E Hydrophobic interactions: E:Y.154, E:Y.154, E:Y.157, E:V.203, E:K.206, E:K.206, E:K.206, E:D.207, E:A.209, E:L.210, E:L.210, E:W.212, E:W.212, E:L.226, E:Y.229, E:F.239, E:F.239, E:W.306, E:W.306 Hydrogen bonds: E:Y.229 Salt bridges: E:K.206 pi-Stacking: E:W.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, P. et al., Activation of the GLP-1 receptor by a non-peptidic agonist. Nature (2020)

Release Date

2020-01-08

Peptides

Guanine nucleotide-binding protein G(s) subunit alpha isoforms short: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Nanobody 35: D
Glucagon-like peptide 1 receptor: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AP

B
BP

C
GP

D
NP

E
RP

Membrane

We predict this structure to be a membrane protein.
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Guanine nucleotide-binding protein G(s) subunit alpha isoforms short

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Nanobody 35

Glucagon-like peptide 1 receptor

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