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SMTL ID : 6xbl.1

Structure of human SMO-Gi complex with SAG

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.96 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x V0S: 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide(Non-covalent)

V0S.1:

14 residues within 4Å:

Chain A: N.219, M.301, L.303, D.382, D.384, Y.394, K.395, D.473, W.480, E.481, F.484, P.513, E.518
Ligands: CLR.2

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:L.303, A:Y.394, A:Y.394, A:Y.394, A:K.395, A:W.480, A:F.484, A:F.484, A:F.484
Hydrogen bonds: A:N.219, A:K.395, A:D.473, A:E.518
pi-Cation interactions: A:K.395

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:

15 residues within 4Å:

Chain A: W.281, V.329, F.391, Y.394, V.404, I.408, A.459, F.462, V.463, T.466, H.470, N.521, M.525, T.528
Ligands: V0S.1

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:W.281, A:V.329, A:F.391, A:F.391, A:V.404, A:V.404, A:F.462, A:V.463, A:N.521, A:M.525, A:T.528
Hydrogen bonds: A:Y.394

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Qi, X. et al., Sterols in an intramolecular channel of Smoothened mediate Hedgehog signaling. Nat.Chem.Biol. (2020)

Release Date

2020-09-30

Peptides

Smoothened homolog: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
S

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Smoothened homolog

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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