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SMTL ID : 6xbl.1

Structure of human SMO-Gi complex with SAG

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.96 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x V0S: 3-chloro-N-[trans-4-(methylamino)cyclohexyl]-N-{[3-(pyridin-4-yl)phenyl]methyl}-1-benzothiophene-2-carboxamide(Non-covalent)

V0S.1:

14 residues within 4Å:

Chain A: N.219, M.301, L.303, D.382, D.384, Y.394, K.395, D.473, W.480, E.481, F.484, P.513, E.518
Ligands: CLR.2

14 PLIP interactions:

14 interactions with chain A

Hydrophobic interactions: A:L.303, A:Y.394, A:Y.394, A:Y.394, A:K.395, A:W.480, A:F.484, A:F.484, A:F.484
Hydrogen bonds: A:N.219, A:K.395, A:D.473, A:E.518
pi-Cation interactions: A:K.395

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2:

15 residues within 4Å:

Chain A: W.281, V.329, F.391, Y.394, V.404, I.408, A.459, F.462, V.463, T.466, H.470, N.521, M.525, T.528
Ligands: V0S.1

12 PLIP interactions:

12 interactions with chain A

Hydrophobic interactions: A:W.281, A:V.329, A:F.391, A:F.391, A:V.404, A:V.404, A:F.462, A:V.463, A:N.521, A:M.525, A:T.528
Hydrogen bonds: A:Y.394

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Qi, X. et al., Sterols in an intramolecular channel of Smoothened mediate Hedgehog signaling. Nat.Chem.Biol. (2020)

Release Date

2020-09-30

Peptides

Smoothened homolog: A
Guanine nucleotide-binding protein G(i) subunit alpha-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
A

C
B

D
G

E
S

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Smoothened homolog

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

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7p00.1 | 7p02.1 | 7piu.1 | 7piv.1 | 7qvm.1 | 7ra3.1 | 7ran.1 | 7rbt.1 | 7rg9.1 | 7rgp.1 | 7s8l.1 | 7s8m.1 | 7s8n.1 | 7s8o.1 | 7s8p.1 | 7sbf.1 | 7scg.1 | 7sf7.1 | 7sf8.1 | 7sr8.1 | 7srr.1 | 7t10.1 | 7t11.1 | 7t2g.1 | 7t2h.1 | 7t6b.1 | 7t8x.1 | 7t90.1 | 7t94.1 | 7t96.1 | 7t9i.1 | 7t9n.1 | 7tmw.1 | 7try.1 | 7ts0.1 | 7tuz.1 | 7tyf.1 | 7tyh.1 | 7tyi.1 | 7tyl.1 | 7tyn.1 | 7tyo.1 | 7tyw.1 | 7tyx.1 | 7tyy.1 | 7tzf.1 | 7u2k.1 | 7u2l.1 | 7um5.1 | 7um6.1 | 7um7.1 | 7utz.1 | 7v35.1 | 7v68.1 | 7v69.1 | 7v6a.1 | 7v9l.1 | 7v9m.1 | 7vdh.1 | 7vdl.1 | 7vdm.1 | 7vfx.1 | 7vgx.1 | 7vie.1 | 7vif.1 | 7vig.1 | 7vih.1 | 7vkt.1 | 7vl8.1 | 7vl9.1 | 7vla.1 | 7vqx.1 | 7vug.1 | 7vuh.1 | 7vui.1 | 7vuj.1 | 7vuy.1 | 7vuz.1 | 7vv3.1 | 7vv5.1 | 7w0l.1 | 7w0m.1 | 7w0n.1 | 7w0o.1 | 7w0p.1 | 7w2z.1 | 7w6p.1 | 7w7e.1 | 7wbj.1 | 7wcm.1 | 7wcn.1 | 7wf7.1 | 7wj5.1 | 7wkd.1 | 7wq3.1 | 7wq4.1 | 7wu2.1 | 7wu3.1 | 7wu4.1 | 7wu5.1 | 7wu9.1 | 7wuj.1 | 7wuq.1 | 7wv9.1 | 7wvu.1 | 7wvv.1 | 7wvw.1 | 7wvx.1 | 7wvy.1 | 7wxu.1 | 7wxw.1 | 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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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