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SMTL ID : 7d77.1

Cryo-EM structure of the cortisol-bound adhesion receptor GPR97-Go complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

3 x PLM: PALMITIC ACID(Covalent)(Non-covalent)

PLM.1:	10 residues within 4Å: Chain A: C.223 Chain D: H.321, M.368, E.371, A.372, H.374, L.375, F.451, T.454, S.495 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:A.372, D:L.375, D:L.375, D:F.451, D:T.454
PLM.3:	8 residues within 4Å: Chain D: Y.302, R.306, V.322, G.326, F.329, L.330 Ligands: CLR.6, CLR.7 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.302, D:V.322, D:F.329, D:L.330 Salt bridges: D:R.306
PLM.4:	8 residues within 4Å: Chain D: L.370, F.373, F.387, K.393, L.394, V.397, Y.450, T.454 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:L.370, D:F.373, D:F.387, D:L.394, D:V.397 Salt bridges: D:K.393

1 x Y01: CHOLESTEROL HEMISUCCINATE(Non-covalent)

Y01.2:

8 residues within 4Å:

Chain D: L.404, M.405, G.408, T.409, A.412, Y.441, A.442, I.445

6 PLIP interactions:

6 interactions with chain D

Hydrophobic interactions: D:L.404, D:A.412, D:Y.441, D:Y.441, D:I.445, D:I.445

1 x HCY: (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione

HCY.5:

9 residues within 4Å:

Chain D: L.331, N.332, F.335, F.357, I.420, W.433, W.502, L.510, N.522

5 PLIP interactions:

5 interactions with chain D

Hydrophobic interactions: D:F.335, D:F.357, D:I.420, D:L.510
Hydrogen bonds: D:N.522

2 x CLR: CHOLESTEROL(Non-covalent)

CLR.6:	6 residues within 4Å: Chain D: L.392, S.395, L.396, W.399 Ligands: PLM.3, CLR.7 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.392, D:L.396
CLR.7:	6 residues within 4Å: Chain D: Y.359, F.360, W.399, V.406 Ligands: PLM.3, CLR.6 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:Y.359, D:F.360, D:F.360, D:W.399, D:V.406

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ping, Y.Q. et al., Structures of the glucocorticoid-bound adhesion receptor GPR97-G o complex. Nature (2021)

Release Date

2021-02-03

Peptides

Guanine nucleotide-binding protein G(o) subunit alpha: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
Adhesion G protein-coupled receptor G3; GPR97: D
scFv16: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
R

E
S

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(o) subunit alpha

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

Adhesion G protein-coupled receptor G3; GPR97

scFv16

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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