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SMTL ID : 7e9g.1

Cryo-EM structure of Gi-bound metabotropic glutamate receptor mGlu2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-2-mer

Ligands

2 x 40F: (1S,2S,5R,6S)-2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylic acid(Non-covalent)

40F.1:	13 residues within 4Å: Chain A: R.49, R.53, S.135, Y.136, S.137, A.158, S.159, T.160, Y.208, R.263, D.287, G.288, K.369 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.136, A:Y.208, A:R.263 Hydrogen bonds: A:T.160, A:T.160 Salt bridges: A:R.49, A:R.53, A:K.369
40F.3:	13 residues within 4Å: Chain B: R.49, R.53, S.135, Y.136, S.137, A.158, S.159, T.160, Y.208, R.263, D.287, G.288, K.369 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.136, B:Y.208, B:R.263 Hydrogen bonds: B:T.160 Salt bridges: B:R.49, B:R.53, B:K.369, B:K.369

1 x HZR: 1-butyl-3-chloranyl-4-(4-phenylpiperidin-1-yl)pyridin-2-one(Non-covalent)

HZR.2:

10 residues within 4Å:

Chain A: L.631, F.635, Y.639, M.720, L.724, N.727, W.765, L.769, F.772, S.776

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:M.720, A:W.765, A:L.769, A:F.772
Hydrogen bonds: A:Y.639, A:N.727
pi-Stacking: A:F.772

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lin, S. et al., Structures of G i -bound metabotropic glutamate receptors mGlu2 and mGlu4. Nature (2021)

Release Date

2021-06-23

Peptides

Metabotropic glutamate receptor 2: AB
Guanine nucleotide-binding protein G(i) subunit alpha-1: C
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: D
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: E
scFv16: F
DN13: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
S

C
A

D
B

E
C

F
D

G
E

H
F

Membrane

We predict this structure to be a membrane protein.
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Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Metabotropic glutamate receptor 2

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

scFv16

DN13

Toggle Identical (GH)

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
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Extreme

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