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SMTL ID : 7eb2.1

Cryo-EM structure of human GABA(B) receptor-Gi protein complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x 2C0: baclofen(Non-covalent)

2C0.1:

12 residues within 4Å:

Chain E: W.184, C.248, S.249, G.270, S.272, H.289, F.368, Y.369, I.395, W.397, Y.398, E.468

8 PLIP interactions:

8 interactions with chain E

Hydrophobic interactions: E:W.184, E:Y.369, E:W.397
Hydrogen bonds: E:S.249, E:S.272, E:Y.369, E:E.468
Halogen bonds: E:F.368

1 x FN0: (3S)-5,7-ditert-butyl-3-oxidanyl-3-(trifluoromethyl)-1-benzofuran-2-one(Non-covalent)

FN0.2:

8 residues within 4Å:

Chain E: Y.791, K.794, G.808, M.809, Y.812
Chain F: K.679, Y.680, M.683

3 PLIP interactions:

3 interactions with chain E

Hydrophobic interactions: E:Y.791
Hydrogen bonds: E:K.794
Salt bridges: E:K.794

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Shen, C. et al., Structural basis of GABA B receptor-G i protein coupling. Nature (2021)

Release Date

2021-05-05

Peptides

Guanine nucleotide-binding protein G(i) subunit alpha-1: A
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1: B
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2: C
ScFv16: D
Gamma-aminobutyric acid type B receptor subunit 1: E
Gamma-aminobutyric acid type B receptor subunit 2: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
Y

D
N

E
C

F
D

Membrane

We predict this structure to be a membrane protein.
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Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Guanine nucleotide-binding protein G(i) subunit alpha-1

Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2

ScFv16

Gamma-aminobutyric acid type B receptor subunit 1

Gamma-aminobutyric acid type B receptor subunit 2

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Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

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